Pandora-TractSeg Atlas

Pandora_TractSeg

Full Quality Version: Download MP4

Overview

The Pandora-TractSeg brain atlas is a white-matter tract parcellation derived from the Pandora dataset, which aggregates multi-cohort, multi-scanner diffusion MRI processed with the TractSeg framework to yield consistent, data-driven delineations of major fiber bundles across the brain. It parcellates a large set of anatomically defined tracts (e.g., association, commissural, and projection pathways) identified via convolutional neural networks trained on high-quality diffusion data, generating probabilistic or template-based representations of tract location and shape in standard space. Construction typically involves preprocessing and harmonization of diffusion MRI, estimation of fiber orientation distributions, automated tract segmentation with TractSeg, and subsequent spatial normalization and averaging across many subjects to produce robust group-level tract probability maps and labels. The atlas is used in neuroimaging research to quantify tract-specific microstructural measures, perform region-of-interest analyses, guide tract-based spatial statistics, and study developmental, aging, or disease-related alterations in white-matter pathways in a standardized and reproducible manner. There is no direct link to the website.

Overview generated by GPT-4o (2026).


Click any region name to view its full visualization and description.

ID Acronym Region
0 AF_left af_left
1 AF_right af_right
2 ATR_left atr_left
3 ATR_right atr_right
4 CA ca
5 CC_1 cc_1
6 CC_2 cc_2
7 CC_3 cc_3
8 CC_4 cc_4
9 CC_5 cc_5
10 CC_6 cc_6
11 CC_7 cc_7
12 CC cc
13 CG_left cg_left
14 CG_right cg_right
15 CST_left cst_left
16 CST_right cst_right
17 FPT_left fpt_left
18 FPT_right fpt_right
19 FX_left fx_left
20 FX_right fx_right
21 ICP_left icp_left
22 ICP_right icp_right
23 IFO_left ifo_left
24 IFO_right ifo_right
25 ILF_left ilf_left
26 ILF_right ilf_right
27 MCP mcp
28 MLF_left mlf_left
29 MLF_right mlf_right
30 OR_left or_left
31 OR_right or_right
32 POPT_left popt_left
33 POPT_right popt_right
34 SCP_left scp_left
35 SCP_right scp_right
36 SLF_III_left slf_iii_left
37 SLF_III_right slf_iii_right
38 SLF_II_left slf_ii_left
39 SLF_II_right slf_ii_right
40 SLF_I_left slf_i_left
41 SLF_I_right slf_i_right
42 ST_FO_left st_fo_left
43 ST_FO_right st_fo_right
44 ST_OCC_left st_occ_left
45 ST_OCC_right st_occ_right
46 ST_PAR_left st_par_left
47 ST_PAR_right st_par_right
48 ST_POSTC_left st_postc_left
49 ST_POSTC_right st_postc_right
50 ST_PREC_left st_prec_left
51 ST_PREC_right st_prec_right
52 ST_PREF_left st_pref_left
53 ST_PREF_right st_pref_right
54 ST_PREM_left st_prem_left
55 ST_PREM_right st_prem_right
56 STR_left str_left
57 STR_right str_right
58 T_OCC_left t_occ_left
59 T_OCC_right t_occ_right
60 T_PAR_left t_par_left
61 T_PAR_right t_par_right
62 T_POSTC_left t_postc_left
63 T_POSTC_right t_postc_right
64 T_PREC_left t_prec_left
65 T_PREC_right t_prec_right
66 T_PREF_left t_pref_left
67 T_PREF_right t_pref_right
68 T_PREM_left t_prem_left
69 T_PREM_right t_prem_right
70 UF_left uf_left
71 UF_right uf_right

Citation

Wali Sidiqyar*, Gaurav Rudravaram*, Elyssa M. McMaster, Trent M. Schwartz, Adam M. Saunders, Kurt G. Schilling, Bennett A. Landman "Introducing SPINS: A Shared Public Visualization Library of Neuroanatomical Structures." Medical Imaging with Deep Learning- short paper

This resource is licensed under CC0 1.0 Universal (Public Domain).