Juelich maxprob thr25 2mm Atlas

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Overview

The Juelich maxprob thr25 2mm brain atlas is a probabilistic, cytoarchitectonic atlas of the human brain that parcellates cortical and subcortical regions based on microstructural features identified in post-mortem histological preparations, subsequently registered to a standard stereotaxic space (MNI) and converted into a maximum probability map where each voxel is assigned to the most likely cytoarchitectonic area if its probability exceeds a 25% threshold, resampled at 2 mm isotropic resolution. It is constructed by sectioning and staining multiple human brains, delineating cortical areas and subcortical nuclei under microscopic inspection, reconstructing these regions in 3D, normalizing individual brains to a common template, and then averaging and modeling intersubject variability to yield probabilistic maps for each region, which are combined into a maximum probability parcellation. The atlas is used for functional and structural neuroimaging studies to attribute activations or structural differences to specific cytoarchitectonically defined regions, to guide region-of-interest analyses, and to improve anatomical specificity in group-level MRI studies by providing microstructurally informed labels in standard space. Atlas Website

Overview generated by GPT-4o (2026).

Click any region name to view its full visualization and description.

ID Acronym Region
1 GM Anterior intra-parietal sulcus hIP1 L gm anterior intra-parietal sulcus hip1 l_bilateral
2 GM Anterior intra-parietal sulcus hIP1 R gm anterior intra-parietal sulcus hip1 r_bilateral
3 GM Anterior intra-parietal sulcus hIP2 L gm anterior intra-parietal sulcus hip2 l_bilateral
4 GM Anterior intra-parietal sulcus hIP2 R gm anterior intra-parietal sulcus hip2 r_bilateral
5 GM Anterior intra-parietal sulcus hIP3 L gm anterior intra-parietal sulcus hip3 l_bilateral
6 GM Anterior intra-parietal sulcus hIP3 R gm anterior intra-parietal sulcus hip3 r_bilateral
7 GM Amygdala_centromedial group L gm amygdala centromedial group l_bilateral
8 GM Amygdala_centromedial group R gm amygdala centromedial group r_bilateral
9 GM Amygdala_laterobasal group L gm amygdala laterobasal group l_bilateral
10 GM Amygdala_laterobasal group R gm amygdala laterobasal group r_bilateral
11 GM Amygdala_superficial group L gm amygdala superficial group l_bilateral
12 GM Amygdala_superficial group R gm amygdala superficial group r_bilateral
13 GM Broca’s area BA44 L gm broca’s area ba44 l_bilateral
14 GM Broca’s area BA44 R gm broca’s area ba44 r_bilateral
15 GM Broca’s area BA45 L gm broca’s area ba45 l_bilateral
16 GM Broca’s area BA45 R gm broca’s area ba45 r_bilateral
17 GM Hippocampus cornu ammonis L gm hippocampus cornu ammonis l_bilateral
18 GM Hippocampus cornu ammonis R gm hippocampus cornu ammonis r_bilateral
19 GM Hippocampus entorhinal cortex L gm hippocampus entorhinal cortex l_bilateral
20 GM Hippocampus entorhinal cortex R gm hippocampus entorhinal cortex r_bilateral
21 GM Hippocampus dentate gyrus L gm hippocampus dentate gyrus l_bilateral
22 GM Hippocampus dentate gyrus R gm hippocampus dentate gyrus r_bilateral
23 GM Hippocampus hippocampal-amygdaloid transition area L gm hippocampus hippocampal-amygdaloid transition area l_bilateral
24 GM Hippocampus hippocampal-amygdaloid transition area R gm hippocampus hippocampal-amygdaloid transition area r_bilateral
25 GM Hippocampus subiculum L gm hippocampus subiculum l_bilateral
26 GM Hippocampus subiculum R gm hippocampus subiculum r_bilateral
27 GM Inferior parietal lobule PF L gm inferior parietal lobule pf l_bilateral
28 GM Inferior parietal lobule PF R gm inferior parietal lobule pf r_bilateral
29 GM Inferior parietal lobule PFcm L gm inferior parietal lobule pfcm l_bilateral
30 GM Inferior parietal lobule PFcm R gm inferior parietal lobule pfcm r_bilateral
31 GM Inferior parietal lobule PFm L gm inferior parietal lobule pfm l_bilateral
32 GM Inferior parietal lobule PFm R gm inferior parietal lobule pfm r_bilateral
33 GM Inferior parietal lobule PFop L gm inferior parietal lobule pfop l_bilateral
34 GM Inferior parietal lobule PFop R gm inferior parietal lobule pfop r_bilateral
35 GM Inferior parietal lobule PFt L gm inferior parietal lobule pft l_bilateral
36 GM Inferior parietal lobule PFt R gm inferior parietal lobule pft r_bilateral
37 GM Inferior parietal lobule Pga L gm inferior parietal lobule pga l_bilateral
38 GM Inferior parietal lobule Pga R gm inferior parietal lobule pga r_bilateral
39 GM Inferior parietal lobule PGp L gm inferior parietal lobule pgp l_bilateral
40 GM Inferior parietal lobule PGp R gm inferior parietal lobule pgp r_bilateral
41 GM Primary auditory cortex TE1.0 L gm primary auditory cortex te1.0 l_bilateral
42 GM Primary auditory cortex TE1.0 R gm primary auditory cortex te1.0 r_bilateral
43 GM Primary auditory cortex TE1.1 L gm primary auditory cortex te1.1 l_bilateral
44 GM Primary auditory cortex TE1.1 R gm primary auditory cortex te1.1 r_bilateral
45 GM Primary auditory cortex TE1.2 L gm primary auditory cortex te1.2 l_bilateral
46 GM Primary auditory cortex TE1.2 R gm primary auditory cortex te1.2 r_bilateral
47 GM Primary motor cortex BA4a L gm primary motor cortex ba4a l_bilateral
48 GM Primary motor cortex BA4a R gm primary motor cortex ba4a r_bilateral
49 GM Primary motor cortex BA4p L gm primary motor cortex ba4p l_bilateral
50 GM Primary motor cortex BA4p R gm primary motor cortex ba4p r_bilateral
51 GM Primary somatosensory cortex BA1 L gm primary somatosensory cortex ba1 l_bilateral
52 GM Primary somatosensory cortex BA1 R gm primary somatosensory cortex ba1 r_bilateral
53 GM Primary somatosensory cortex BA2 L gm primary somatosensory cortex ba2 l_bilateral
54 GM Primary somatosensory cortex BA2 R gm primary somatosensory cortex ba2 r_bilateral
55 GM Primary somatosensory cortex BA3a L gm primary somatosensory cortex ba3a l_bilateral
56 GM Primary somatosensory cortex BA3a R gm primary somatosensory cortex ba3a r_bilateral
57 GM Primary somatosensory cortex BA3b L gm primary somatosensory cortex ba3b l_bilateral
58 GM Primary somatosensory cortex BA3b R gm primary somatosensory cortex ba3b r_bilateral
59 GM Secondary somatosensory cortex Parietal operculum OP1 L gm secondary somatosensory cortex parietal operculum op1 l_bilateral
60 GM Secondary somatosensory cortex Parietal operculum OP1 R gm secondary somatosensory cortex parietal operculum op1 r_bilateral
61 GM Secondary somatosensory cortex Parietal operculum OP2 L gm secondary somatosensory cortex parietal operculum op2 l_bilateral
62 GM Secondary somatosensory cortex Parietal operculum OP2 R gm secondary somatosensory cortex parietal operculum op2 r_bilateral
63 GM Secondary somatosensory cortex Parietal operculum OP3 L gm secondary somatosensory cortex parietal operculum op3 l_bilateral
64 GM Secondary somatosensory cortex Parietal operculum OP3 R gm secondary somatosensory cortex parietal operculum op3 r_bilateral
65 GM Secondary somatosensory cortex Parietal operculum OP4 L gm secondary somatosensory cortex parietal operculum op4 l_bilateral
66 GM Secondary somatosensory cortex Parietal operculum OP4 R gm secondary somatosensory cortex parietal operculum op4 r_bilateral
67 GM Superior parietal lobule 5Ci L gm superior parietal lobule 5ci l_bilateral
68 GM Superior parietal lobule 5Ci R gm superior parietal lobule 5ci r_bilateral
69 GM Superior parietal lobule 5L L gm superior parietal lobule 5l l_bilateral
70 GM Superior parietal lobule 5L R gm superior parietal lobule 5l r_bilateral
71 GM Superior parietal lobule 5M L gm superior parietal lobule 5m l_bilateral
72 GM Superior parietal lobule 5M R gm superior parietal lobule 5m r_bilateral
73 GM Superior parietal lobule 7A L gm superior parietal lobule 7a l_bilateral
74 GM Superior parietal lobule 7A R gm superior parietal lobule 7a r_bilateral
75 GM Superior parietal lobule 7M L gm superior parietal lobule 7m l_bilateral
76 GM Superior parietal lobule 7M R gm superior parietal lobule 7m r_bilateral
77 GM Superior parietal lobule 7PC L gm superior parietal lobule 7pc l_bilateral
78 GM Superior parietal lobule 7PC R gm superior parietal lobule 7pc r_bilateral
79 GM Superior parietal lobule 7P L gm superior parietal lobule 7p l_bilateral
80 GM Superior parietal lobule 7P R gm superior parietal lobule 7p r_bilateral
81 GM Visual cortex V1 BA17 L gm visual cortex v1 ba17 l_bilateral
82 GM Visual cortex V1 BA17 R gm visual cortex v1 ba17 r_bilateral
83 GM Visual cortex V2 BA18 L gm visual cortex v2 ba18 l_bilateral
84 GM Visual cortex V2 BA18 R gm visual cortex v2 ba18 r_bilateral
85 GM Visual cortex V3V L gm visual cortex v3v l_bilateral
86 GM Visual cortex V3V R gm visual cortex v3v r_bilateral
87 GM Visual cortex V4 L gm visual cortex v4 l_bilateral
88 GM Visual cortex V4 R gm visual cortex v4 r_bilateral
89 GM Visual cortex V5 L gm visual cortex v5 l_bilateral
90 GM Visual cortex V5 R gm visual cortex v5 r_bilateral
91 GM Premotor cortex BA6 L gm premotor cortex ba6 l_bilateral
92 GM Premotor cortex BA6 R gm premotor cortex ba6 r_bilateral
93 WM Acoustic radiation R wm acoustic radiation r_bilateral
94 WM Acoustic radiation L wm acoustic radiation l_bilateral
95 WM Callosal body wm callosal body_bilateral
96 WM Cingulum R wm cingulum r_bilateral
97 WM Cingulum L wm cingulum l_bilateral
98 WM Corticospinal tract R wm corticospinal tract r_bilateral
99 WM Corticospinal tract L wm corticospinal tract l_bilateral
100 WM Fornix wm fornix_bilateral
101 WM Inferior occipito-frontal fascicle R wm inferior occipito-frontal fascicle r_bilateral
102 WM Inferior occipito-frontal fascicle L wm inferior occipito-frontal fascicle l_bilateral
103 GM Lateral geniculate body R gm lateral geniculate body r_bilateral
104 GM Lateral geniculate body L gm lateral geniculate body l_bilateral
105 GM Mamillary body gm mamillary body_bilateral
106 GM Medial geniculate body R gm medial geniculate body r_bilateral
107 GM Medial geniculate body L gm medial geniculate body l_bilateral
108 WM Optic radiation R wm optic radiation r_bilateral
109 WM Optic radiation L wm optic radiation l_bilateral
110 WM Superior longitudinal fascicle R wm superior longitudinal fascicle r_bilateral
111 WM Superior longitudinal fascicle L wm superior longitudinal fascicle l_bilateral
112 WM Superior occipito-frontal fascicle R wm superior occipito-frontal fascicle r_bilateral
113 WM Superior occipito-frontal fascicle L wm superior occipito-frontal fascicle l_bilateral
114 WM Uncinate fascicle R wm uncinate fascicle r_bilateral
115 WM Uncinate fascicle L wm uncinate fascicle l_bilateral
116 GM Insula Id1 L gm insula id1 l_bilateral
117 GM Insula Id1 R gm insula id1 r_bilateral
118 GM Insula Ig1 L gm insula ig1 l_bilateral
119 GM Insula Ig1 R gm insula ig1 r_bilateral
120 GM Insula Ig2 L gm insula ig2 l_bilateral
121 GM Insula Ig2 R gm insula ig2 r_bilateral

Citation

Wali Sidiqyar*, Gaurav Rudravaram*, Elyssa M. McMaster, Trent M. Schwartz, Adam M. Saunders, Kurt G. Schilling, Bennett A. Landman "Introducing SPINS: A Shared Public Visualization Library of Neuroanatomical Structures." Medical Imaging with Deep Learning- short paper

This resource is licensed under CC0 1.0 Universal (Public Domain).